IL_6Q97_090

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCUC*GCGAGC(PSU)GG

Length

15 nucleotides

Bulged bases

6Q97|1|1|A|2577

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|C|2507
6Q97|1|1|G|2508
6Q97|1|1|G|2509
6Q97|1|1|C|2510
6Q97|1|1|U|2511
6Q97|1|1|C|2512
*
6Q97|1|1|G|2574
6Q97|1|1|C|2575
6Q97|1|1|G|2576
6Q97|1|1|A|2577
6Q97|1|1|G|2578
6Q97|1|1|C|2579
6Q97|1|1|PSU|2580
6Q97|1|1|G|2581
6Q97|1|1|G|2582

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Nascent peptide

Chain C

50S ribosomal protein L3

Chain b

50S ribosomal protein L32