IL_6Q97_098
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUC*GACAG
- Length
- 9 nucleotides
- Bulged bases
- 6Q97|1|1|A|2602
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_098 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.301
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6Q97|1|1|C|2591
6Q97|1|1|G|2592
6Q97|1|1|U|2593
6Q97|1|1|C|2594
*
6Q97|1|1|G|2599
6Q97|1|1|A|2600
6Q97|1|1|C|2601
6Q97|1|1|A|2602
6Q97|1|1|G|2603
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain 6
- Nascent peptide
- Chain 7
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
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