IL_6Q97_099

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAGG*CCGAGAUGAG

Length

16 nucleotides

Bulged bases

6Q97|1|1|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|C|2636
6Q97|1|1|U|2637
6Q97|1|1|G|2638
6Q97|1|1|A|2639
6Q97|1|1|G|2640
6Q97|1|1|G|2641
*
6Q97|1|1|C|2773
6Q97|1|1|C|2774
6Q97|1|1|G|2775
6Q97|1|1|A|2776
6Q97|1|1|G|2777
6Q97|1|1|A|2778
6Q97|1|1|U|2779
6Q97|1|1|G|2780
6Q97|1|1|A|2781
6Q97|1|1|G|2782

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain J

50S ribosomal protein L13