IL_6Q97_138

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_138 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3799

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6Q97|1|2|G|597
6Q97|1|2|U|598
6Q97|1|2|C|599
*
6Q97|1|2|G|639
6Q97|1|2|A|640
6Q97|1|2|U|641
6Q97|1|2|A|642
6Q97|1|2|C|643

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain v

30S ribosomal protein S17