IL_6Q97_145

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGGGGAG*UCCAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|771
6Q97|1|2|U|772
6Q97|1|2|G|773
6Q97|1|2|G|774
6Q97|1|2|G|775
6Q97|1|2|G|776
6Q97|1|2|A|777
6Q97|1|2|G|778
*
6Q97|1|2|U|804
6Q97|1|2|C|805
6Q97|1|2|C|806
6Q97|1|2|A|807
6Q97|1|2|C|808

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

50S ribosomal protein L2

Chain p

30S ribosomal protein S11

Chain t

30S ribosomal protein S15