IL_6Q97_179

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_179 not in the Motif Atlas

Homologous match to IL_4WSM_380

Geometric discrepancy: 0.2832

The information below is about IL_4WSM_380

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|8|C|3
6Q97|1|8|U|4
6Q97|1|8|A|5
*
6Q97|1|8|U|69
6Q97|1|8|A|70
6Q97|1|8|G|71

Current chains

Chain 8

tRNA-Met

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain c

50S ribosomal protein L33