3D structure

PDB id
6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAAACC*GGAGAUAGCU
Length
16 nucleotides
Bulged bases
6Q97|1|1|G|801, 6Q97|1|1|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q97|1|1|G|674
6Q97|1|1|A|675
6Q97|1|1|A|676
6Q97|1|1|A|677
6Q97|1|1|C|678
6Q97|1|1|C|679
*
6Q97|1|1|G|798
6Q97|1|1|G|799
6Q97|1|1|A|800
6Q97|1|1|G|801
6Q97|1|1|A|802
6Q97|1|1|U|803
6Q97|1|1|A|804
6Q97|1|1|G|805
6Q97|1|1|C|806
6Q97|1|1|U|807

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain L
50S ribosomal protein L15

Coloring options:

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