IL_6Q97_185

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAAGG*CUGGAGGA

Length

15 nucleotides

Bulged bases

6Q97|1|1|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_185 not in the Motif Atlas

Geometric match to IL_8VTW_001

Geometric discrepancy: 0.285

The information below is about IL_8VTW_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Q97|1|1|U|702
6Q97|1|1|U|703
6Q97|1|1|G|704
6Q97|1|1|A|705
6Q97|1|1|A|706
6Q97|1|1|G|707
6Q97|1|1|G|708
*
6Q97|1|1|C|723
6Q97|1|1|U|724
6Q97|1|1|G|725
6Q97|1|1|G|726
6Q97|1|1|A|727
6Q97|1|1|G|728
6Q97|1|1|G|729
6Q97|1|1|A|730

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2