IL_6Q97_193

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGUU*ACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_193 not in the Motif Atlas

Geometric match to IL_7A0S_112

Geometric discrepancy: 0.2783

The information below is about IL_7A0S_112

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6Q97|1|1|G|1309
6Q97|1|1|G|1310
6Q97|1|1|G|1311
6Q97|1|1|U|1312
6Q97|1|1|U|1313
*
6Q97|1|1|A|1603
6Q97|1|1|C|1604
6Q97|1|1|C|1605

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34