IL_6Q97_194

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGGGACGGA*UUCCAGGAAAAGCCU

Length

25 nucleotides

Bulged bases

6Q97|1|1|A|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|G|1422
6Q97|1|1|G|1423
6Q97|1|1|G|1424
6Q97|1|1|G|1425
6Q97|1|1|G|1426
6Q97|1|1|A|1427
6Q97|1|1|C|1428
6Q97|1|1|G|1429
6Q97|1|1|G|1430
6Q97|1|1|A|1431
*
6Q97|1|1|U|1562
6Q97|1|1|U|1563
6Q97|1|1|C|1564
6Q97|1|1|C|1565
6Q97|1|1|A|1566
6Q97|1|1|G|1567
6Q97|1|1|G|1568
6Q97|1|1|A|1569
6Q97|1|1|A|1570
6Q97|1|1|A|1571
6Q97|1|1|A|1572
6Q97|1|1|G|1573
6Q97|1|1|C|1574
6Q97|1|1|C|1575
6Q97|1|1|U|1576

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2