IL_6Q97_196

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

6Q97|1|1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_196 not in the Motif Atlas

Homologous match to IL_4WF9_116

Geometric discrepancy: 0.2872

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6Q97|1|1|U|1468
6Q97|1|1|A|1469
6Q97|1|1|A|1470
6Q97|1|1|G|1471
6Q97|1|1|C|1472
*
6Q97|1|1|G|1519
6Q97|1|1|U|1520
6Q97|1|1|G|1521
6Q97|1|1|A|1522
6Q97|1|1|U|1523
6Q97|1|1|G|1524

Current chains

Chain 1

23S ribosomal RNA

Nearby chains