IL_6Q97_197

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUGUAG*UGAGGCG

Length

14 nucleotides

Bulged bases

6Q97|1|1|G|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_197 not in the Motif Atlas

Geometric match to IL_4WF9_031

Geometric discrepancy: 0.3505

The information below is about IL_4WF9_031

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_94128.1

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6Q97|1|1|C|1472
6Q97|1|1|G|1473
6Q97|1|1|U|1474
6Q97|1|1|G|1475
6Q97|1|1|U|1476
6Q97|1|1|A|1477
6Q97|1|1|G|1478
*
6Q97|1|1|U|1513
6Q97|1|1|G|1514
6Q97|1|1|A|1515
6Q97|1|1|G|1516
6Q97|1|1|G|1517
6Q97|1|1|C|1518
6Q97|1|1|G|1519

Current chains

Chain 1

23S ribosomal RNA

Nearby chains