IL_6Q97_207
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGCCUUGAUGUGUAGGAUAGG*CCCUUUAAUGUUU
- Length
- 34 nucleotides
- Bulged bases
- 6Q97|1|1|G|2110, 6Q97|1|1|U|2111, 6Q97|1|1|A|2114, 6Q97|1|1|U|2118, 6Q97|1|1|A|2119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|A|2101
6Q97|1|1|G|2102
6Q97|1|1|C|2103
6Q97|1|1|C|2104
6Q97|1|1|U|2105
6Q97|1|1|U|2106
6Q97|1|1|G|2107
6Q97|1|1|A|2108
6Q97|1|1|U|2109
6Q97|1|1|G|2110
6Q97|1|1|U|2111
6Q97|1|1|G|2112
6Q97|1|1|U|2113
6Q97|1|1|A|2114
6Q97|1|1|G|2115
6Q97|1|1|G|2116
6Q97|1|1|A|2117
6Q97|1|1|U|2118
6Q97|1|1|A|2119
6Q97|1|1|G|2120
6Q97|1|1|G|2121
*
6Q97|1|1|C|2177
6Q97|1|1|C|2178
6Q97|1|1|C|2179
6Q97|1|1|U|2180
6Q97|1|1|U|2181
6Q97|1|1|U|2182
6Q97|1|1|A|2183
6Q97|1|1|A|2184
6Q97|1|1|U|2185
6Q97|1|1|G|2186
6Q97|1|1|U|2187
6Q97|1|1|U|2188
6Q97|1|1|U|2189
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
Coloring options: