IL_6Q97_216

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAGG*CCAUGC

Length

11 nucleotides

Bulged bases

6Q97|1|2|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_216 not in the Motif Atlas

Geometric match to IL_6CZR_167

Geometric discrepancy: 0.2593

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6Q97|1|2|G|42
6Q97|1|2|C|43
6Q97|1|2|A|44
6Q97|1|2|G|45
6Q97|1|2|G|46
*
6Q97|1|2|C|395
6Q97|1|2|C|396
6Q97|1|2|A|397
6Q97|1|2|U|398
6Q97|1|2|G|399
6Q97|1|2|C|400

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain u

30S ribosomal protein S16