IL_6Q97_217

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGC

Length

44 nucleotides

Bulged bases

6Q97|1|2|C|48, 6Q97|1|2|A|51, 6Q97|1|2|U|368, 6Q97|1|2|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|46
6Q97|1|2|C|47
6Q97|1|2|C|48
6Q97|1|2|U|49
6Q97|1|2|A|50
6Q97|1|2|A|51
6Q97|1|2|C|52
*
6Q97|1|2|G|359
6Q97|1|2|G|360
6Q97|1|2|G|361
6Q97|1|2|G|362
6Q97|1|2|A|363
6Q97|1|2|A|364
6Q97|1|2|U|365
6Q97|1|2|A|366
6Q97|1|2|U|367
6Q97|1|2|U|368
6Q97|1|2|G|369
6Q97|1|2|C|370
6Q97|1|2|A|371
6Q97|1|2|C|372
6Q97|1|2|A|373
6Q97|1|2|A|374
6Q97|1|2|U|375
6Q97|1|2|G|376
6Q97|1|2|G|377
6Q97|1|2|G|378
6Q97|1|2|C|379
6Q97|1|2|G|380
6Q97|1|2|C|381
6Q97|1|2|A|382
6Q97|1|2|A|383
6Q97|1|2|G|384
6Q97|1|2|C|385
6Q97|1|2|C|386
6Q97|1|2|U|387
6Q97|1|2|G|388
6Q97|1|2|A|389
6Q97|1|2|U|390
6Q97|1|2|G|391
6Q97|1|2|C|392
6Q97|1|2|A|393
6Q97|1|2|G|394
6Q97|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16