IL_6Q97_219

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUUAGCUAGU*AGGCGACGAUCCC

Length

26 nucleotides

Bulged bases

6Q97|1|2|U|244, 6Q97|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|240
6Q97|1|2|G|241
6Q97|1|2|G|242
6Q97|1|2|A|243
6Q97|1|2|U|244
6Q97|1|2|U|245
6Q97|1|2|A|246
6Q97|1|2|G|247
6Q97|1|2|C|248
6Q97|1|2|U|249
6Q97|1|2|A|250
6Q97|1|2|G|251
6Q97|1|2|U|252
*
6Q97|1|2|A|274
6Q97|1|2|G|275
6Q97|1|2|G|276
6Q97|1|2|C|277
6Q97|1|2|G|278
6Q97|1|2|A|279
6Q97|1|2|C|280
6Q97|1|2|G|281
6Q97|1|2|A|282
6Q97|1|2|U|283
6Q97|1|2|C|284
6Q97|1|2|C|285
6Q97|1|2|C|286

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17