IL_6Q97_225

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAUCCCCG*UGGGAACUG

Length

20 nucleotides

Bulged bases

6Q97|1|2|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|U|605
6Q97|1|2|G|606
6Q97|1|2|A|607
6Q97|1|2|A|608
6Q97|1|2|A|609
6Q97|1|2|U|610
6Q97|1|2|C|611
6Q97|1|2|C|612
6Q97|1|2|C|613
6Q97|1|2|C|614
6Q97|1|2|G|615
*
6Q97|1|2|U|625
6Q97|1|2|G|626
6Q97|1|2|G|627
6Q97|1|2|G|628
6Q97|1|2|A|629
6Q97|1|2|A|630
6Q97|1|2|C|631
6Q97|1|2|U|632
6Q97|1|2|G|633

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain m

30S ribosomal protein S8

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17