IL_6Q97_230

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACGGGGGC*GCCUUGU

Length

15 nucleotides

Bulged bases

6Q97|1|2|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|A|923
6Q97|1|2|C|924
6Q97|1|2|G|925
6Q97|1|2|G|926
6Q97|1|2|G|927
6Q97|1|2|G|928
6Q97|1|2|G|929
6Q97|1|2|C|930
*
6Q97|1|2|G|1387
6Q97|1|2|C|1388
6Q97|1|2|C|1389
6Q97|1|2|U|1390
6Q97|1|2|U|1391
6Q97|1|2|G|1392
6Q97|1|2|U|1393

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 9

mRNA

Chain j

30S ribosomal protein S5

Chain l

30S ribosomal protein S7