IL_6Q97_236

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUGUGAAAUGUU*GCAA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|U|1073
6Q97|1|2|G|1074
6Q97|1|2|U|1075
6Q97|1|2|U|1076
6Q97|1|2|G|1077
6Q97|1|2|U|1078
6Q97|1|2|G|1079
6Q97|1|2|A|1080
6Q97|1|2|A|1081
6Q97|1|2|A|1082
6Q97|1|2|U|1083
6Q97|1|2|G|1084
6Q97|1|2|U|1085
6Q97|1|2|U|1086
*
6Q97|1|2|G|1099
6Q97|1|2|C|1100
6Q97|1|2|A|1101
6Q97|1|2|A|1102

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain j

30S ribosomal protein S5

Chain z

30S ribosomal protein S21