IL_6Q97_238

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUUGGAGUC*GACUCCAUGAAG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|C|1303
6Q97|1|2|G|1304
6Q97|1|2|G|1305
6Q97|1|2|A|1306
6Q97|1|2|U|1307
6Q97|1|2|U|1308
6Q97|1|2|G|1309
6Q97|1|2|G|1310
6Q97|1|2|A|1311
6Q97|1|2|G|1312
6Q97|1|2|U|1313
6Q97|1|2|C|1314
*
6Q97|1|2|G|1323
6Q97|1|2|A|1324
6Q97|1|2|C|1325
6Q97|1|2|U|1326
6Q97|1|2|C|1327
6Q97|1|2|C|1328
6Q97|1|2|A|1329
6Q97|1|2|U|1330
6Q97|1|2|G|1331
6Q97|1|2|A|1332
6Q97|1|2|A|1333
6Q97|1|2|G|1334

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L31

Chain r

30S ribosomal protein S13

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19