IL_6Q97_240

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

(5MC)ACACCAUGGGAGUG*CAUGACUGGGGUGAAG

Length

31 nucleotides

Bulged bases

6Q97|1|2|U|1485, 6Q97|1|2|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|5MC|1407
6Q97|1|2|A|1408
6Q97|1|2|C|1409
6Q97|1|2|A|1410
6Q97|1|2|C|1411
6Q97|1|2|C|1412
6Q97|1|2|A|1413
6Q97|1|2|U|1414
6Q97|1|2|G|1415
6Q97|1|2|G|1416
6Q97|1|2|G|1417
6Q97|1|2|A|1418
6Q97|1|2|G|1419
6Q97|1|2|U|1420
6Q97|1|2|G|1421
*
6Q97|1|2|C|1479
6Q97|1|2|A|1480
6Q97|1|2|U|1481
6Q97|1|2|G|1482
6Q97|1|2|A|1483
6Q97|1|2|C|1484
6Q97|1|2|U|1485
6Q97|1|2|G|1486
6Q97|1|2|G|1487
6Q97|1|2|G|1488
6Q97|1|2|G|1489
6Q97|1|2|U|1490
6Q97|1|2|G|1491
6Q97|1|2|A|1492
6Q97|1|2|A|1493
6Q97|1|2|G|1494

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 5

SsrA-binding protein

Chain 9

mRNA

Chain K

50S ribosomal protein L14

Chain q

30S ribosomal protein S12