IL_6Q97_241

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAGCUUAACC*GGAGGGCGC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|1439
6Q97|1|2|U|1440
6Q97|1|2|A|1441
6Q97|1|2|G|1442
6Q97|1|2|C|1443
6Q97|1|2|U|1444
6Q97|1|2|U|1445
6Q97|1|2|A|1446
6Q97|1|2|A|1447
6Q97|1|2|C|1448
6Q97|1|2|C|1449
*
6Q97|1|2|G|1454
6Q97|1|2|G|1455
6Q97|1|2|A|1456
6Q97|1|2|G|1457
6Q97|1|2|G|1458
6Q97|1|2|G|1459
6Q97|1|2|C|1460
6Q97|1|2|G|1461
6Q97|1|2|C|1462

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L19

Chain y

30S ribosomal protein S20