IL_6Q97_244
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUGCGAAACCCAAG*CGAGGAUGUAGGAA
- Length
- 29 nucleotides
- Bulged bases
- 6Q97|1|4|A|32, 6Q97|1|4|A|33, 6Q97|1|4|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|4|U|26
6Q97|1|4|U|27
6Q97|1|4|U|28
6Q97|1|4|G|29
6Q97|1|4|C|30
6Q97|1|4|G|31
6Q97|1|4|A|32
6Q97|1|4|A|33
6Q97|1|4|A|34
6Q97|1|4|C|35
6Q97|1|4|C|36
6Q97|1|4|C|37
6Q97|1|4|A|38
6Q97|1|4|A|39
6Q97|1|4|G|40
*
6Q97|1|4|C|314
6Q97|1|4|G|315
6Q97|1|4|A|316
6Q97|1|4|G|317
6Q97|1|4|G|318
6Q97|1|4|A|319
6Q97|1|4|U|320
6Q97|1|4|G|321
6Q97|1|4|U|322
6Q97|1|4|A|323
6Q97|1|4|G|324
6Q97|1|4|G|325
6Q97|1|4|A|326
6Q97|1|4|A|327
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- SsrA-binding protein
- Chain I
- 50S ribosomal protein L11
- Chain x
- 30S ribosomal protein S19
Coloring options: