IL_6Q97_255
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCGAAA(5MU)UCCUUG*C(5MC)UGCAC
- Length
- 20 nucleotides
- Bulged bases
- 6Q97|1|1|A|1938, 6Q97|1|1|U|1944
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|G|1933
6Q97|1|1|C|1934
6Q97|1|1|G|1935
6Q97|1|1|A|1936
6Q97|1|1|A|1937
6Q97|1|1|A|1938
6Q97|1|1|5MU|1939
6Q97|1|1|U|1940
6Q97|1|1|C|1941
6Q97|1|1|C|1942
6Q97|1|1|U|1943
6Q97|1|1|U|1944
6Q97|1|1|G|1945
*
6Q97|1|1|C|1961
6Q97|1|1|5MC|1962
6Q97|1|1|U|1963
6Q97|1|1|G|1964
6Q97|1|1|C|1965
6Q97|1|1|A|1966
6Q97|1|1|C|1967
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain 7
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
Coloring options: