3D structure

PDB id
6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCGAAA(5MU)UCCUUG*C(5MC)UGCAC
Length
20 nucleotides
Bulged bases
6Q97|1|1|A|1938, 6Q97|1|1|U|1944
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q97|1|1|G|1933
6Q97|1|1|C|1934
6Q97|1|1|G|1935
6Q97|1|1|A|1936
6Q97|1|1|A|1937
6Q97|1|1|A|1938
6Q97|1|1|5MU|1939
6Q97|1|1|U|1940
6Q97|1|1|C|1941
6Q97|1|1|C|1942
6Q97|1|1|U|1943
6Q97|1|1|U|1944
6Q97|1|1|G|1945
*
6Q97|1|1|C|1961
6Q97|1|1|5MC|1962
6Q97|1|1|U|1963
6Q97|1|1|G|1964
6Q97|1|1|C|1965
6Q97|1|1|A|1966
6Q97|1|1|C|1967

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain 4
Transfer-messenger RNA; tmRNA
Chain 7
Transfer RNA; tRNA
Chain B
50S ribosomal protein L2

Coloring options:

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