IL_6Q97_267

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGGA*UCCGGAGCUAACGCGUUAAG

Length

26 nucleotides

Bulged bases

6Q97|1|2|U|871, 6Q97|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|C|826
6Q97|1|2|U|827
6Q97|1|2|U|828
6Q97|1|2|G|829
6Q97|1|2|G|830
6Q97|1|2|A|831
*
6Q97|1|2|U|855
6Q97|1|2|C|856
6Q97|1|2|C|857
6Q97|1|2|G|858
6Q97|1|2|G|859
6Q97|1|2|A|860
6Q97|1|2|G|861
6Q97|1|2|C|862
6Q97|1|2|U|863
6Q97|1|2|A|864
6Q97|1|2|A|865
6Q97|1|2|C|866
6Q97|1|2|G|867
6Q97|1|2|C|868
6Q97|1|2|G|869
6Q97|1|2|U|870
6Q97|1|2|U|871
6Q97|1|2|A|872
6Q97|1|2|A|873
6Q97|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain j

30S ribosomal protein S5

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21