IL_6Q97_270

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAGUUUU*AGAAUGUGCCUUCGGGAACCG

Length

31 nucleotides

Bulged bases

6Q97|1|2|G|1026, 6Q97|1|2|U|1030, 6Q97|1|2|C|1031, 6Q97|1|2|G|1032, 6Q97|1|2|C|1038

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|C|1001
6Q97|1|2|G|1002
6Q97|1|2|G|1003
6Q97|1|2|A|1004
6Q97|1|2|A|1005
6Q97|1|2|G|1006
6Q97|1|2|U|1007
6Q97|1|2|U|1008
6Q97|1|2|U|1009
6Q97|1|2|U|1010
*
6Q97|1|2|A|1019
6Q97|1|2|G|1020
6Q97|1|2|A|1021
6Q97|1|2|A|1022
6Q97|1|2|U|1023
6Q97|1|2|G|1024
6Q97|1|2|U|1025
6Q97|1|2|G|1026
6Q97|1|2|C|1027
6Q97|1|2|C|1028
6Q97|1|2|U|1029
6Q97|1|2|U|1030
6Q97|1|2|C|1031
6Q97|1|2|G|1032
6Q97|1|2|G|1033
6Q97|1|2|G|1034
6Q97|1|2|A|1035
6Q97|1|2|A|1036
6Q97|1|2|C|1037
6Q97|1|2|C|1038
6Q97|1|2|G|1039

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14