IL_6Q97_271

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCUGCAU*AUG(2MG)CC

Length

15 nucleotides

Bulged bases

6Q97|1|2|U|1049, 6Q97|1|2|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|1048
6Q97|1|2|U|1049
6Q97|1|2|G|1050
6Q97|1|2|C|1051
6Q97|1|2|U|1052
6Q97|1|2|G|1053
6Q97|1|2|C|1054
6Q97|1|2|A|1055
6Q97|1|2|U|1056
*
6Q97|1|2|A|1204
6Q97|1|2|U|1205
6Q97|1|2|G|1206
6Q97|1|2|2MG|1207
6Q97|1|2|C|1208
6Q97|1|2|C|1209

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain h

30S ribosomal protein S3

Chain o

30S ribosomal protein S10

Chain s

30S ribosomal protein S14