IL_6Q98_003
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 6Q98|1|1|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_003 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.3034
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6Q98|1|1|G|81
6Q98|1|1|U|82
6Q98|1|1|A|83
6Q98|1|1|A|84
6Q98|1|1|G|85
*
6Q98|1|1|C|97
6Q98|1|1|G|98
6Q98|1|1|U|99
6Q98|1|1|U|100
6Q98|1|1|A|101
6Q98|1|1|U|102
6Q98|1|1|A|103
6Q98|1|1|A|104
6Q98|1|1|C|105
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain U
- 50S ribosomal protein L24
- Chain Y
- 50S ribosomal protein L29
Coloring options: