IL_6Q98_005
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_005 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.2023
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6Q98|1|1|G|188
6Q98|1|1|G|189
6Q98|1|1|A|190
6Q98|1|1|A|191
6Q98|1|1|C|192
6Q98|1|1|U|193
6Q98|1|1|G|194
*
6Q98|1|1|C|201
6Q98|1|1|U|202
6Q98|1|1|A|203
6Q98|1|1|A|204
6Q98|1|1|G|205
6Q98|1|1|U|206
6Q98|1|1|A|207
6Q98|1|1|C|208
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L28
- Chain e
- 50S ribosomal protein L35
Coloring options: