IL_6Q98_009
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAACC*GGAGUGAAAAAGAAC
- Length
- 20 nucleotides
- Bulged bases
- 6Q98|1|1|A|504, 6Q98|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_009 not in the Motif Atlas
- Geometric match to IL_4V9F_014
- Geometric discrepancy: 0.2479
- The information below is about IL_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31504.1
- Basepair signature
- cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
6Q98|1|1|G|481
6Q98|1|1|A|482
6Q98|1|1|A|483
6Q98|1|1|C|484
6Q98|1|1|C|485
*
6Q98|1|1|G|495
6Q98|1|1|G|496
6Q98|1|1|A|497
6Q98|1|1|G|498
6Q98|1|1|U|499
6Q98|1|1|G|500
6Q98|1|1|A|501
6Q98|1|1|A|502
6Q98|1|1|A|503
6Q98|1|1|A|504
6Q98|1|1|A|505
6Q98|1|1|G|506
6Q98|1|1|A|507
6Q98|1|1|A|508
6Q98|1|1|C|509
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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