IL_6Q98_018

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_018 not in the Motif Atlas

Homologous match to IL_4WF9_028

Geometric discrepancy: 0.1778

The information below is about IL_4WF9_028

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6Q98|1|1|C|837
6Q98|1|1|C|838
*
6Q98|1|1|G|940
6Q98|1|1|A|941
6Q98|1|1|G|942

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain e

50S ribosomal protein L35