IL_6Q98_032
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAUGUG*UGCGC
- Length
- 11 nucleotides
- Bulged bases
- 6Q98|1|1|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_032 not in the Motif Atlas
- Geometric match to IL_6CZR_167
- Geometric discrepancy: 0.3371
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6Q98|1|1|G|1031
6Q98|1|1|A|1032
6Q98|1|1|U|1033
6Q98|1|1|G|1034
6Q98|1|1|U|1035
6Q98|1|1|G|1036
*
6Q98|1|1|U|1119
6Q98|1|1|G|1120
6Q98|1|1|C|1121
6Q98|1|1|G|1122
6Q98|1|1|C|1123
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain f
- 50S ribosomal protein L36
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