IL_6Q98_039
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_039 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1584
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6Q98|1|1|A|1262
6Q98|1|1|U|1263
6Q98|1|1|A|1264
6Q98|1|1|A|1265
6Q98|1|1|G|1266
6Q98|1|1|U|1267
6Q98|1|1|A|1268
6Q98|1|1|A|1269
*
6Q98|1|1|U|2011
6Q98|1|1|G|2012
6Q98|1|1|A|2013
6Q98|1|1|A|2014
6Q98|1|1|A|2015
6Q98|1|1|U|2016
6Q98|1|1|U|2017
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain D
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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