IL_6Q98_041

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCAACG*CGGG

Length

10 nucleotides

Bulged bases

6Q98|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|C|1319
6Q98|1|1|C|1320
6Q98|1|1|A|1321
6Q98|1|1|A|1322
6Q98|1|1|C|1323
6Q98|1|1|G|1324
*
6Q98|1|1|C|1330
6Q98|1|1|G|1331
6Q98|1|1|G|1332
6Q98|1|1|G|1333

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Nascent peptide

Chain S

50S ribosomal protein L22

Chain T

50S ribosomal protein L23