3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
CGAGGC*GCGUAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q98_042 not in the Motif Atlas
Geometric match to IL_3LQX_002
Geometric discrepancy: 0.2624
The information below is about IL_3LQX_002
Detailed Annotation
tSH-tHW-tHS-cWW
Broad Annotation
No text annotation
Motif group
IL_76308.6
Basepair signature
cWW-tSH-tHW-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6Q98|1|1|C|1357
6Q98|1|1|G|1358
6Q98|1|1|A|1359
6Q98|1|1|G|1360
6Q98|1|1|G|1361
6Q98|1|1|C|1362
*
6Q98|1|1|G|1369
6Q98|1|1|C|1370
6Q98|1|1|G|1371
6Q98|1|1|U|1372
6Q98|1|1|A|1373
6Q98|1|1|G|1374

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain X
50S ribosomal protein L28
Chain d
50S ribosomal protein L34

Coloring options:


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