IL_6Q98_057

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6Q98|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_057 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1536

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6Q98|1|1|C|1686
6Q98|1|1|G|1687
6Q98|1|1|U|1688
6Q98|1|1|A|1689
6Q98|1|1|A|1690
6Q98|1|1|C|1691
*
6Q98|1|1|G|1696
6Q98|1|1|G|1697
6Q98|1|1|A|1698
6Q98|1|1|G|1699
6Q98|1|1|A|1700
6Q98|1|1|A|1701
6Q98|1|1|G|1702

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2