IL_6Q98_069
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CCCGU(G7M)AA*UACUCCG(2MG)G
- Length
- 17 nucleotides
- Bulged bases
- 6Q98|1|1|U|2068, 6Q98|1|1|A|2439
- QA status
- Modified nucleotides: G7M, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|C|2064
6Q98|1|1|C|2065
6Q98|1|1|C|2066
6Q98|1|1|G|2067
6Q98|1|1|U|2068
6Q98|1|1|G7M|2069
6Q98|1|1|A|2070
6Q98|1|1|A|2071
*
6Q98|1|1|U|2438
6Q98|1|1|A|2439
6Q98|1|1|C|2440
6Q98|1|1|U|2441
6Q98|1|1|C|2442
6Q98|1|1|C|2443
6Q98|1|1|G|2444
6Q98|1|1|2MG|2445
6Q98|1|1|G|2446
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain 6
- Nascent peptide
- Chain B
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
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