IL_6Q98_072

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

6Q98|1|1|A|2163, 6Q98|1|1|C|2165, 6Q98|1|1|U|2166, 6Q98|1|1|U|2167, 6Q98|1|1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|G|2124
6Q98|1|1|G|2125
6Q98|1|1|A|2126
6Q98|1|1|G|2127
*
6Q98|1|1|C|2161
6Q98|1|1|G|2162
6Q98|1|1|A|2163
6Q98|1|1|C|2164
6Q98|1|1|C|2165
6Q98|1|1|U|2166
6Q98|1|1|U|2167
6Q98|1|1|G|2168
6Q98|1|1|A|2169
6Q98|1|1|A|2170
6Q98|1|1|A|2171
6Q98|1|1|U|2172
6Q98|1|1|A|2173
6Q98|1|1|C|2174

Current chains

Chain 1

23S ribosomal RNA

Nearby chains