IL_6Q98_089

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGUUC*GGUAGC

Length

12 nucleotides

Bulged bases

6Q98|1|1|U|2689, 6Q98|1|1|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|G|2686
6Q98|1|1|U|2687
6Q98|1|1|G|2688
6Q98|1|1|U|2689
6Q98|1|1|U|2690
6Q98|1|1|C|2691
*
6Q98|1|1|G|2718
6Q98|1|1|G|2719
6Q98|1|1|U|2720
6Q98|1|1|A|2721
6Q98|1|1|G|2722
6Q98|1|1|C|2723

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19