IL_6Q98_135

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6Q98|1|2|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_135 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1997

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6Q98|1|2|G|925
6Q98|1|2|G|926
6Q98|1|2|G|927
*
6Q98|1|2|U|1390
6Q98|1|2|U|1391

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein