IL_6Q98_137

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAGU*AUGUGCCUUCGGGAAC

Length

21 nucleotides

Bulged bases

6Q98|1|2|U|1025, 6Q98|1|2|U|1030, 6Q98|1|2|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|G|1003
6Q98|1|2|A|1004
6Q98|1|2|A|1005
6Q98|1|2|G|1006
6Q98|1|2|U|1007
*
6Q98|1|2|A|1022
6Q98|1|2|U|1023
6Q98|1|2|G|1024
6Q98|1|2|U|1025
6Q98|1|2|G|1026
6Q98|1|2|C|1027
6Q98|1|2|C|1028
6Q98|1|2|U|1029
6Q98|1|2|U|1030
6Q98|1|2|C|1031
6Q98|1|2|G|1032
6Q98|1|2|G|1033
6Q98|1|2|G|1034
6Q98|1|2|A|1035
6Q98|1|2|A|1036
6Q98|1|2|C|1037

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14