IL_6Q98_147

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAGCGACCU*AGCAAGCGGACC

Length

22 nucleotides

Bulged bases

6Q98|1|2|A|1257, 6Q98|1|2|A|1280, 6Q98|1|2|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|G|1255
6Q98|1|2|A|1256
6Q98|1|2|A|1257
6Q98|1|2|G|1258
6Q98|1|2|C|1259
6Q98|1|2|G|1260
6Q98|1|2|A|1261
6Q98|1|2|C|1262
6Q98|1|2|C|1263
6Q98|1|2|U|1264
*
6Q98|1|2|A|1271
6Q98|1|2|G|1272
6Q98|1|2|C|1273
6Q98|1|2|A|1274
6Q98|1|2|A|1275
6Q98|1|2|G|1276
6Q98|1|2|C|1277
6Q98|1|2|G|1278
6Q98|1|2|G|1279
6Q98|1|2|A|1280
6Q98|1|2|C|1281
6Q98|1|2|C|1282

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain o

30S ribosomal protein S10

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19