3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
AAAGAAG*CCACUU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q98|1|2|A|1429
6Q98|1|2|A|1430
6Q98|1|2|A|1431
6Q98|1|2|G|1432
6Q98|1|2|A|1433
6Q98|1|2|A|1434
6Q98|1|2|G|1435
*
6Q98|1|2|C|1466
6Q98|1|2|C|1467
6Q98|1|2|A|1468
6Q98|1|2|C|1469
6Q98|1|2|U|1470
6Q98|1|2|U|1471

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain y
30S ribosomal protein S20

Coloring options:

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