IL_6Q98_165

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

6Q98|1|4|U|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_165 not in the Motif Atlas

Geometric match to IL_8P9A_358

Geometric discrepancy: 0.3941

The information below is about IL_8P9A_358

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6Q98|1|4|A|113
6Q98|1|4|G|114
*
6Q98|1|4|C|130
6Q98|1|4|U|131
6Q98|1|4|U|132

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain h

30S ribosomal protein S3