IL_6Q98_167

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGGAAGC*GUUGAAGC

Length

16 nucleotides

Bulged bases

6Q98|1|4|G|204, 6Q98|1|4|G|205, 6Q98|1|4|G|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|4|G|202
6Q98|1|4|U|203
6Q98|1|4|G|204
6Q98|1|4|G|205
6Q98|1|4|A|206
6Q98|1|4|A|207
6Q98|1|4|G|208
6Q98|1|4|C|209
*
6Q98|1|4|G|220
6Q98|1|4|U|221
6Q98|1|4|U|222
6Q98|1|4|G|223
6Q98|1|4|A|224
6Q98|1|4|A|225
6Q98|1|4|G|226
6Q98|1|4|C|227

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains