IL_6Q98_169
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUACCGUGAGGGAAAG
- Length
- 33 nucleotides
- Bulged bases
- 6Q98|1|1|U|34, 6Q98|1|1|U|448, 6Q98|1|1|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|C|32
6Q98|1|1|C|33
6Q98|1|1|U|34
6Q98|1|1|G|35
*
6Q98|1|1|C|445
6Q98|1|1|G|446
6Q98|1|1|A|447
6Q98|1|1|U|448
6Q98|1|1|A|449
6Q98|1|1|G|450
6Q98|1|1|U|451
6Q98|1|1|G|452
6Q98|1|1|A|453
6Q98|1|1|A|454
6Q98|1|1|C|455
6Q98|1|1|C|456
6Q98|1|1|A|457
6Q98|1|1|G|458
6Q98|1|1|U|459
6Q98|1|1|A|460
6Q98|1|1|C|461
6Q98|1|1|C|462
6Q98|1|1|G|463
6Q98|1|1|U|464
6Q98|1|1|G|465
6Q98|1|1|A|466
6Q98|1|1|G|467
6Q98|1|1|G|468
6Q98|1|1|G|469
6Q98|1|1|A|470
6Q98|1|1|A|471
6Q98|1|1|A|472
6Q98|1|1|G|473
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain D
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
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