IL_6Q98_177

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UCCCAAAGUC*GCA

Length

13 nucleotides

Bulged bases

6Q98|1|1|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|U|1004
6Q98|1|1|C|1005
6Q98|1|1|C|1006
6Q98|1|1|C|1007
6Q98|1|1|A|1008
6Q98|1|1|A|1009
6Q98|1|1|A|1010
6Q98|1|1|G|1011
6Q98|1|1|U|1012
6Q98|1|1|C|1013
*
6Q98|1|1|G|1149
6Q98|1|1|C|1150
6Q98|1|1|A|1151

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20