IL_6Q98_180

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GACG*CGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_180 not in the Motif Atlas

Geometric match to IL_8CRE_401

Geometric discrepancy: 0.3682

The information below is about IL_8CRE_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6Q98|1|1|G|1168
6Q98|1|1|A|1169
6Q98|1|1|C|1170
6Q98|1|1|G|1171
*
6Q98|1|1|C|1178
6Q98|1|1|G|1179
6Q98|1|1|U|1180
6Q98|1|1|U|1181

Current chains

Chain 1

23S ribosomal RNA

Nearby chains