3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
AACAUUGAGCCUUGAUGUGUAGGAUAGGUGG*CCACCCUUUAAUGUUUGAUGUU
Length
53 nucleotides
Bulged bases
6Q98|1|1|U|2111, 6Q98|1|1|G|2112, 6Q98|1|1|U|2113, 6Q98|1|1|A|2114, 6Q98|1|1|G|2115, 6Q98|1|1|G|2116, 6Q98|1|1|A|2117, 6Q98|1|1|U|2118, 6Q98|1|1|A|2119, 6Q98|1|1|G|2121, 6Q98|1|1|C|2175, 6Q98|1|1|C|2177, 6Q98|1|1|C|2178, 6Q98|1|1|C|2179, 6Q98|1|1|U|2180, 6Q98|1|1|U|2181
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q98|1|1|A|2094
6Q98|1|1|A|2095
6Q98|1|1|C|2096
6Q98|1|1|A|2097
6Q98|1|1|U|2098
6Q98|1|1|U|2099
6Q98|1|1|G|2100
6Q98|1|1|A|2101
6Q98|1|1|G|2102
6Q98|1|1|C|2103
6Q98|1|1|C|2104
6Q98|1|1|U|2105
6Q98|1|1|U|2106
6Q98|1|1|G|2107
6Q98|1|1|A|2108
6Q98|1|1|U|2109
6Q98|1|1|G|2110
6Q98|1|1|U|2111
6Q98|1|1|G|2112
6Q98|1|1|U|2113
6Q98|1|1|A|2114
6Q98|1|1|G|2115
6Q98|1|1|G|2116
6Q98|1|1|A|2117
6Q98|1|1|U|2118
6Q98|1|1|A|2119
6Q98|1|1|G|2120
6Q98|1|1|G|2121
6Q98|1|1|U|2122
6Q98|1|1|G|2123
6Q98|1|1|G|2124
*
6Q98|1|1|C|2174
6Q98|1|1|C|2175
6Q98|1|1|A|2176
6Q98|1|1|C|2177
6Q98|1|1|C|2178
6Q98|1|1|C|2179
6Q98|1|1|U|2180
6Q98|1|1|U|2181
6Q98|1|1|U|2182
6Q98|1|1|A|2183
6Q98|1|1|A|2184
6Q98|1|1|U|2185
6Q98|1|1|G|2186
6Q98|1|1|U|2187
6Q98|1|1|U|2188
6Q98|1|1|U|2189
6Q98|1|1|G|2190
6Q98|1|1|A|2191
6Q98|1|1|U|2192
6Q98|1|1|G|2193
6Q98|1|1|U|2194
6Q98|1|1|U|2195

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain G
50S ribosomal protein L9

Coloring options:

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