IL_6Q98_192
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AACAUUGAGCCUUGAUGUGUAGGAUAGGUGG*CCACCCUUUAAUGUUUGAUGUU
- Length
- 53 nucleotides
- Bulged bases
- 6Q98|1|1|U|2111, 6Q98|1|1|G|2112, 6Q98|1|1|U|2113, 6Q98|1|1|A|2114, 6Q98|1|1|G|2115, 6Q98|1|1|G|2116, 6Q98|1|1|A|2117, 6Q98|1|1|U|2118, 6Q98|1|1|A|2119, 6Q98|1|1|G|2121, 6Q98|1|1|C|2175, 6Q98|1|1|C|2177, 6Q98|1|1|C|2178, 6Q98|1|1|C|2179, 6Q98|1|1|U|2180, 6Q98|1|1|U|2181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|A|2094
6Q98|1|1|A|2095
6Q98|1|1|C|2096
6Q98|1|1|A|2097
6Q98|1|1|U|2098
6Q98|1|1|U|2099
6Q98|1|1|G|2100
6Q98|1|1|A|2101
6Q98|1|1|G|2102
6Q98|1|1|C|2103
6Q98|1|1|C|2104
6Q98|1|1|U|2105
6Q98|1|1|U|2106
6Q98|1|1|G|2107
6Q98|1|1|A|2108
6Q98|1|1|U|2109
6Q98|1|1|G|2110
6Q98|1|1|U|2111
6Q98|1|1|G|2112
6Q98|1|1|U|2113
6Q98|1|1|A|2114
6Q98|1|1|G|2115
6Q98|1|1|G|2116
6Q98|1|1|A|2117
6Q98|1|1|U|2118
6Q98|1|1|A|2119
6Q98|1|1|G|2120
6Q98|1|1|G|2121
6Q98|1|1|U|2122
6Q98|1|1|G|2123
6Q98|1|1|G|2124
*
6Q98|1|1|C|2174
6Q98|1|1|C|2175
6Q98|1|1|A|2176
6Q98|1|1|C|2177
6Q98|1|1|C|2178
6Q98|1|1|C|2179
6Q98|1|1|U|2180
6Q98|1|1|U|2181
6Q98|1|1|U|2182
6Q98|1|1|A|2183
6Q98|1|1|A|2184
6Q98|1|1|U|2185
6Q98|1|1|G|2186
6Q98|1|1|U|2187
6Q98|1|1|U|2188
6Q98|1|1|U|2189
6Q98|1|1|G|2190
6Q98|1|1|A|2191
6Q98|1|1|U|2192
6Q98|1|1|G|2193
6Q98|1|1|U|2194
6Q98|1|1|U|2195
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L9
Coloring options: