IL_6Q98_206

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAACUGCC*GAUGUGC

Length

16 nucleotides

Bulged bases

6Q98|1|2|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|G|128
6Q98|1|2|A|129
6Q98|1|2|A|130
6Q98|1|2|A|131
6Q98|1|2|C|132
6Q98|1|2|U|133
6Q98|1|2|G|134
6Q98|1|2|C|135
6Q98|1|2|C|136
*
6Q98|1|2|G|227
6Q98|1|2|A|228
6Q98|1|2|U|229
6Q98|1|2|G|230
6Q98|1|2|U|231
6Q98|1|2|G|232
6Q98|1|2|C|233

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17

Chain y

30S ribosomal protein S20